They'll make your alternator, air conditioner compressor, power steering pump and water pump operate about 25% slower than their original speeds. If you have an aftermarket stereo system that increases the electrical load you might have a problem with the alternator not being able to keep up (more so at idle speeds).
Worst case scenario is UDP failure. It might not be common but it happens:
http://www.mustangforums.com/m_4435611/tm.htm
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'06 GT, manual
Saleen SC (Brenspeed Stage 2)
FRPP GTA's
Prothane Bullet (lowered) engine mounts
Summitt coils
BMR LCA's & rear sway bar
Nitto 555's on back