it could go either way, depending on how you treat it. My 05 V6 had the bama tune and C&L intake on it for 50k miles with no issues.
as far as filters go, you can get dry filters or oiled filters. I usually tend to stay away from the oiled filters. I've seen so many cases where people over oil the filter and it ends up ruining the Mass Air Flow Sensor, they are a few hundred dollars but its an easy fix. I have a 2014 5.0 now and i intalled my Airraid intake and Bama tune with 500 miles on the odo. i now have almost 8,000 miles and have seen no issues yet.
It depends how you treat the car also. If your constantly mashing the throttle, popping the clutch, doing burnouts, the car is going to wear much faster. All of that is much easier to do with a tune because the power is right there. but if you continue normal driving, routine service you've got nothing to worry about
plus, the AM and BAMA team are awesome with customer service so if there are any issues, they will do everything to help! Good luck