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5.0L (1979-1995) MustangTechnical discussions on 5.0 Liter Mustangs within. This does not include the 5.0 from the 2011 Mustang GT. That information is in the 2005-1011 section.
He was talking about using the Cobra computer with the cobra engine. It that is the case then there would be no problems. He just has to make sure he uses all the other Cobra specs like 24 lb injectors and so on.