Depending on the strategy codes, you may be able to use the current tune on the "replacement" GT. Best bet would be to get the PCM code off the other GT and contact Brenspeed. Worse-comes-to-worse, you return your base GT to stock, dump the old tune and buy new tunes.
07 GT Prem: Alloy, MT, 3.55's, Steeda CAI w/Brenspeed tunes, FRPP Stingers, 275/40/18 Goodyear Eagle F1 A/S on SVT Cobras (OE GT500's), 14" shorty, Wheelskin side scoops & qtr window louvers, A-H rear window louvers, SHR honeycomb blackout panel, Sequentials, Hella Optilux Extreme XY fogs, Silverstars
06 V6: Legend Lime, Pony Package, 14" shorty, Sequentials, Hella Optilux Extreme XY fogs, Silverstars