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SCT is nicer on the tuner. It has a pre-programmed nature that makes it much easier to make quick changes. This is the primary reason it is more prevelant.
They are all the same. Go with what ur tuner uses. Mail in tunes are nice, but remember they have to make a tune that works for me(puerto rico) the same way it will work for a guy that is in alaska and a guy that is in africa. So they tend to be a tad less aggressive.