heres a new one... i think.

I un-locked my car with the remote and opened the driver side door cause i was doing some work cleaning the interior. ( keys not in the ignition)

after about 10/15 minutes i closed the door and the window did not pop back into place. i had to re-open and close the door for it to work.
not a big deal, im assuming there was some sort of time out that caused the window to not work?

 

There's a "finger safety sensor" I think that gets confused sometimes. Same thing happened to me though it had nothing to do with time. My friend and I got out and as we were walking away I looked back at my ride, as I'm sure we all do ten or fifteen times, and saw the passenger window gapped. I dunno exactly what caused it but it definately would suck if I hadn't noticed and it rained...or someone with a coat hanger or slim jim walked by...