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For ipods brandmotion makes something that allows you to hook up your ipod directly to the stereo and control it using the factory controls. I think it runs $150 or so.
If you want to use aux in crutchfield has something that says it worked when I put in that I have an 05 mustang with Shaker 500
I originally tried an adapter made by PAC but could not get it to work. The build quality was garbage anyway. I ended up getting a double din touchscreen unit.