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You don't need it bored over. It will increase performance but is not required. However, you WILL have piston to valve issues if you didn't flycut your pistons or notched them. I don't see that you did... You probably smashed everything up and ruined your pistons heads even possibly your cams...
Wrong. The cams are just fine for the stock bottom end. You just can't completly utilize those cams on a stock bottom end. The tuner sounds like he doesn't know what he is doing. Are you throwing any codes? Is your CEL on? Post your dyno graph.
I am trying to upload the graph but its not working